Package index • bibliomatrix

All functions
`abm_bullet()`	Create bullet graph with reference line
`abm_bullet_plotly()`	Create alternate bullet graph with reference line (using ggplot conversion to plotly)
`abm_bullet_plotly2()`	Create alternate bullet graph with reference line (using plotly directly)
`abm_config()`	Provide defaults for ABM analysis
`abm_copub_countries()`	Create table over co-publication countries for ABM unit
`abm_copub_countries_staffbased()`	Create staffbased table over co-publication countries for ABM unit
`abm_copub_data()`	Retrieve co-publishing organizations for ABM tables
`abm_copub_orgs()`	Create table over co-publication countries for ABM unit
`abm_copub_orgs_staffbased()`	Create staffbased table over co-publication organizations for ABM unit
`abm_coverage()`	Retrieve WoS and Scopus coverage for peer reviewed DiVA publication types
`abm_dash_indices()`	Retrieve dashboard indicators for ABM
`abm_data()`	Retrieve data for ABM tables and graphs from master table
`abm_data_workbook()`	Create Excel workbook with ABM publication data
`abm_decode_jwt()`	Decode JWT string
`abm_divisions()`	Divisions used in ABM
`abm_division_stats()`	Publication summary stats for ABM divisions
`abm_graph_cf()`	Create graph over Cf by year, WoS
`abm_graph_cf_plotly()`	Create graph over DiVA publication types by year, using plotly
`abm_graph_copub()`	Create graph over international and Swedish non-university copublications by year, WoS
`abm_graph_copub_plotly()`	Create graph over international and Swedish non-university copublications by year, using plotly
`abm_graph_diva()`	Create graph over DiVA publication types by year
`abm_graph_diva2()`	Create graph over DiVA publication types by year (ggplot, plotly and ggiraph variants)
`abm_graph_diva_plotly()`	Create graph over DiVA publication types by year, using plotly
`abm_graph_divisions()`	ABM divisions as force directed network
`abm_graph_jcf()`	Create graph over jcf by year, WoS
`abm_graph_jcf_plotly()`	Create graph over jcf by year, using plotly
`abm_graph_oadata_linegraphs()`	Chart displaying the development of Open Access data publications over time
`abm_graph_oadata_pie()`	Create pie chart for Open Access data
`abm_graph_oadata_piechart()`	Pie chart for Open Access data
`abm_graph_oadata_share()`	Chart displaying shares of Open Access data publications
`abm_graph_oadata_stackedarea()`	Create stacked area graph for Open Access data
`abm_graph_oadata_stackedarea_plotly()`	Plotly chart wrapping the abm_graph_oadata_stacked graph
`abm_graph_oa_lines()`	Create line graph over share of publications by OA type and year
`abm_graph_scop_copub()`	Create graph over international and corporate copublications by year, Scopus
`abm_graph_scop_normcit()`	Create graph over Scopus FWCI by years
`abm_graph_scop_snip()`	Create graph over SNIP by year, Scopus
`abm_graph_scop_top10()`	Create graph over Top 10% publications by year, Scopus
`abm_graph_scop_top20()`	Create graph over Top 20% journals by year, Scopus
`abm_graph_sdg()`	Create graph over SDGs
`abm_graph_sdg_mobile()`	Create graph over SDGs, mobile version
`abm_graph_top10()`	Create graph over Top 10% publications by year, Wos
`abm_graph_top10_plotly()`	Create graph over Cf by year, using plotly
`abm_graph_top20()`	Create graph over Top 20% journals by year, WoS
`abm_graph_top20_plotly()`	Create graph over Top 20% journals by year, using plotly
`abm_graph_wos_coverage()`	Create graph over WoS coverage by DiVA publication type
`abm_graph_wos_coverage_plotly()`	Create graph over WoS coverage by year, using plotly
`abm_private_data()`	Private data from the Annual Bibliometric Monitoring project
`abm_publications()`	Retrieve publication list for ABM
`abm_public_data()`	Public data from the Annual Bibliometric Monitoring project
`abm_public_kth`	Public data with Annual Bibliometric Monitoring for KTH assembed in 2019
`abm_pubs_summary()`	Summary for a list of publications
`abm_report()`	A report used in ABM
`abm_researchers()`	Researchers used in ABM
`abm_sdg_table()`	Create table over SDGs for the selected unit
`abm_sdg_year()`	Create table over any SDG by year for the selected unit
`abm_slugs_departments()`	Slugs or identifiers for departments at KTH used in ABM
`abm_staff_data()`	Get publications from members of unit via kthids
`abm_staff_list()`	Get staff list from slug
`abm_table1()`	Retrieve Table 1 (Publications in DiVA) for ABM, fractional counts
`abm_table1_full()`	Retrieve Table 1 (Publications in DiVA) for ABM, full counts
`abm_table2()`	Retrieve Table 2 (Citations 3-year window) for ABM
`abm_table3()`	Retrieve Table 3 (Field normalized citations) for ABM
`abm_table4()`	Retrieve Table 4 (Journal impact) for ABM
`abm_table5()`	Retrieve Table 5 (Co-publishing) for ABM
`abm_table6()`	Retrieve Table 6 (OA data) for ABM
`abm_table_scop_cit()`	Retrieve citations table (Scopus) for ABM
`abm_table_scop_copub()`	Retrieve Co-publishing table (Scopus) for ABM
`abm_table_scop_normcit()`	Retrieve field normalized citations table (Scopus) for ABM
`abm_table_scop_snip()`	Retrieve Journal impact table (Scopus) for ABM
`abm_ui_bullet_citations()`	Bullet graph for citations in ABM
`abm_ui_bullet_journal()`	Bullet graph for journal citations in ABM
`abm_ui_button_altmetric()`	Link to Altmetric Explorer for an organizational unit at KTH
`abm_ui_button_diva()`	Link to DiVA portal at KTH
`abm_ui_button_publist()`	Link to Publication List download for KTH
`abm_ui_datatable_cf()`	Datatable for 3 year citations (cf)
`abm_ui_datatable_cit3y()`	Datatable for 3 year citations
`abm_ui_datatable_copub()`	Datatable for co-publication (WoS)
`abm_ui_datatable_copub_countries()`	Datatable for co-publication countries (WoS)
`abm_ui_datatable_copub_orgs()`	Datatable for co-publication organizations (WoS)
`abm_ui_datatable_diva()`	Datatable for DiVA publications
`abm_ui_datatable_diva_full()`	Datatable for DiVA publications, full counts
`abm_ui_datatable_jcf()`	Datatable for journal impact (jcf)
`abm_ui_datatable_oa()`	Datatable for open access publications
`abm_ui_datatable_publications()`	Datatable for publication list
`abm_ui_datatable_researchers()`	Datatable for researchers
`abm_ui_datatable_scop_cit()`	Datatable for Scopus citations
`abm_ui_datatable_scop_copub()`	Datatable for co-publication (Scopus)
`abm_ui_datatable_scop_normcit()`	Datatable for Scopus FWCI
`abm_ui_datatable_scop_snip()`	Datatable for Scopus journal impact (SNIP)
`abm_ui_datatable_sdg_table()`	Datatable for SDG publications by goal
`abm_ui_datatable_sdg_year()`	Datatable for SDG publications by year
`abm_ui_kable_cf()`	HTML table for 3 year citations (cf)
`abm_ui_kable_cit3y()`	HTML table for 3 year citations
`abm_ui_kable_copub()`	HTML table for co-publication (WoS)
`abm_ui_kable_copub_countries()`	HTML table for co-publication countries (WoS)
`abm_ui_kable_copub_orgs()`	HTML table for co-publication organizations (WoS)
`abm_ui_kable_diva()`	HTML table for DiVA publications
`abm_ui_kable_diva_full()`	HTML table for DiVA publications, full counts
`abm_ui_kable_jcf()`	HTML table for journal impact (jcf)
`abm_ui_kable_oa()`	HTML table for open access publications
`abm_ui_kable_scop_cit()`	HTML table for Scopus citations
`abm_ui_kable_scop_copub()`	HTML table for co-publication (Scopus)
`abm_ui_kable_scop_normcit()`	HTML table for Scopus FWCI
`abm_ui_kable_scop_snip()`	HTML table for Scopus journal impact (SNIP)
`abm_ui_kable_sdg_table()`	HTML table for SDG publications by goal
`abm_ui_kable_sdg_year()`	HTML table for SDG publications by year
`abm_ui_note()`	A note to keep in mind when interpreting results
`abm_ui_summary_pubs()`	Summary valuebox for publications
`abm_ui_valuebox_coverage()`	Value box for coverage in ABM
`abm_ui_valuebox_publications()`	Value box for number of publications in ABM
`abm_ui_waffle_copub()`	Waffle graph for co-publications in ABM
`abm_unit_pubs()`	Publications for ABM researchers belonging to a unit
`abm_unit_stats()`	Publication summary stats for ABM divisions and institutions and schools
`abm_waffle_pct()`	Create waffle chart (5 rows, 20 columns) for any single percentage
`abm_waffle_pct_plotly()`	Create alternate waffle chart (with plotly)
`-package` `bibliomatrix` `package-bibliomatrix`	bibliomatrix
`con_bib()`	Connection to Bibliometrics data source for KTH
`coveragetext()`	Generate text for Web of Science coverage warnings
`db_sqlite_location()`	Location of sqlite3 db file for BIBMON data
`db_sync()`	Sync the MS SQL Server database BIBMON to a local SQLite3 db
`db_upload_crawl()`	Crawl and persist organizational data from KTH API
`db_upsert_table()`	Create or overwrite table at connection source
`displayname_from_kthid()`	KTH displayname from user account identifier
`get_analysis_date()`	Get date of indicator extraction for ABM
`get_indic_descriptions()`	Get displayname and descriptions for indicators
`get_pubtype_order()`	Get order of publication type for ABM table 1
`kthids_from_slug()`	Given a organizational unit slug, such as "j/jj/jjn", retrieves associated KTH researcher ids
`kthid_from_accountname()`	KTH user account identifier (kthid) from account name
`kth_catalog_crawl()`	Given an organizational "slug", a depth first traversal is made enumerating organizational units (descendants)
`kth_divisions_crawl()`	Crawl kthapi for divisions
`kth_theme()`	KTH plot theme for ggplot
`mean_indicator_units()`	Calculate average citation indicators across years
`nowrap_html()`	String formatting utility to avoid wrapping of hyphens inside compound words while retaining search in HTML content using Ctrl-F.
`nowrap_hyphen_sub()`	String formatting utility to substitute soft hyphens inside compound words with non-breaking hard "long" hyphens using HTML character entity encoding
`palette_kth()`	KTH color palette with 5 qualitative colors
`palette_kth_info()`	KTH color palette information
`pool_bib()`	Connection pool to Bibliometrics data source for KTH
`prerender()`	Prerender dashboards for public data
`prerender_cache_location()`	Location for prerender cache with dashboard HTML content
`prerender_cache_sync()`	Update shiny apps www/cache with prerenderd dashboard HTML content
`run_api()`	Running this function launches a Plumber API presenting resources bundled in this package
`run_app()`	Running this function launches a Shiny web application presenting the datasets bundled in this package
`sliding_intervals()`	Create integer intervals useful for e.g. sliding means
`status_db()`	Status message related to db availability
`status_kthapi()`	Status message related to KTH API availability
`status_renviron()`	Status message related to R environment file availability
`timegraph_header_legend()`	Graph to subheader of timegraph
`time_graph()`	Graph of indicators by year, with or without moving average and/or reference line
`unit_info()`	Retrieve information about ABM units (level 0-2) from database or from package data
`wos_attribution()`	Generate Web of Science attribution
`wos_disclaimer()`	Generate Web of Science disclaimer

Reference

All functions